Left Grey White Mask

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Inheritance graph

Defined in file : brainvisa/toolboxes/morphologist/types/anatomy.py

Used in the following processes

2D Parcellation to 3D parcellation
Ana Compute Hemi Grey White Classification
Brain Volumes
CSF Classif
Grey White Classification 2012
Grey white Interface
Grey White Surface 2012
Gyral Parcellation
Import FreeSurfer grey/white segmentation to Morphologist
Import MCRIBS dHCP preterm subject into a brainvisa database
Import MNI CIVET Segmentation
morpho_report
Segmentation of Corpus Callosum
Simplified Morphologist 2025
Sulcal Lines Extraction Left
Sulcal Parcellation
Sulci Distance to Lesion

Associated formats

Aperio svs
BrainVISA volume formats
DICOM image
Directory
ECAT i image
ECAT v image
FDF image
FreesurferMGH
FreesurferMGZ
GIS image
gz compressed ECAT i image
gz compressed ECAT v image
gz compressed GIS image
gz compressed MINC image
gz compressed NIFTI-1 image
gz compressed SPM image
Hamamatsu ndpi
Hamamatsu vms
Hamamatsu vmu
JPEG image
Leica scn
MINC image
NIFTI-1 image
Sakura svslide
SPM image
TIFF image
TIFF(.tif) image
Ventana bif
Z compressed ECAT i image
Z compressed ECAT v image
Z compressed GIS image
Z compressed SPM image
Zeiss czi

Associated ontology rules

  • brainvisa-3.0 :
    • {protocol}/{subject}/segment/Lgrey_white_<subject>
    {protocol}/{subject}/segment/Lgrey_white_<subject>_*
    {protocol}/{subject}/segment/{acquisition}/Lgrey_white_<subject>
    {protocol}/{subject}/segment/{acquisition}/Lgrey_white_<subject>_*
  • brainvisa-3.1.0 :
    • {protocol}/{subject}/t1mri/{acquisition}/{analysis}/segmentation/Lgrey_white_<subject>
  • brainvisa-3.2.0 :
    • {center}/{subject}/t1mri/{acquisition}/{analysis}/segmentation/Lgrey_white_<subject>
  • flat :
    • ./Lgrey_white_<filename>
  • morphologist-bids-1.0 :
    • sub-{subject}/ses-{session}/anat/t1mri/{acquisition}/{analysis}/segmentation/Lgrey_white_<subject>
  • morphologist-bids-2.0 :
    • sub-{subject}/ses-{session}/{bids}/ana-{analysis}/segmentation/sub-<subject>_ses-<session>_<bids>_hemi-L_grey_white

    Key attributes

  • brainvisa-3.0 :
    • protocol ,  subject ,  filename_variable ,  acquisition
  • brainvisa-3.1.0 :
    • protocol ,  subject ,  acquisition ,  analysis
  • brainvisa-3.2.0 :
    • rescan ,  time_duration ,  time_point ,  acquisition_date ,  center ,  subject ,  acquisition ,  analysis
  • morphologist-bids-1.0 :
    • rescan ,  time_duration ,  time_point ,  acquisition_date ,  subject ,  session ,  acquisition ,  analysis
  • morphologist-bids-2.0 :
    • rescan ,  time_duration ,  time_point ,  acquisition_date ,  subject ,  session ,  bids ,  analysis